Saccharomyces cerevisiae
- Tandem Repeat Analysis
Protocol
Experimental procedure
The file s_cerevisiae.fasta corresponds to the frozen data (April 13, 2005
ftp://genome-ftp.stanford.edu/pub/yeast/data_download/sequence/genomic_sequence/chromosomes/fasta/
) of
Saccharomyces cerevisiae
genome.
Genome sequence FASTA file
Genome complexity - 12,156,590 bp
The file was submitted to Tandem Repeats Finder (TRF) (
Benson, 1999
) program using the following parameters:
2 5 7 80 10 25 1000.
TRF output files were analyzed by the Tandem Repeat Analysis Program (TRAP) using the following parameters:
Minimum period size of repeats - 101
Maximum period size of repeats - none
Minimum identity percentage - 70
Create HTML and CSV files - yes
Create TRF-like HTML files - yes
Sorting - according to the total number of bases
Create feature table files - yes
Create redundancy report file - yes